Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
25
total RNA-seq
9
DNase-seq
7
WGBS
3
Hi-C
1
FAIRE-seq
1
MPRA
Assay category
70
DNA binding
25
Transcription
10
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
88
fastq
87
bam
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
25
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
3
bedpe bed3+
3
cool
3
hic
csv
1
txt
Organism
115
Homo sapiens
Biosample type
62
cell line
51
tissue
3
primary cell
Organ
54
liver
15
blood
15
bodily fluid
14
brain
11
pancreas
9
spleen
3
adipose tissue
3
blood vessel
3
connective tissue
3
epithelium
3
heart
3
limb
3
vasculature
2
artery
2
musculature of body
1
eye
1
nerve
1
spinal cord
Project
113
AMP
3
HPAP
Genome assembly (visualization)
79
GRCh38
74
hg19
Lab
113
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
csv
BIOSAMPLE
ASSAY
116 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
MPRA
cell line
HepG2
45
1
GM12878
15
MIN6
1
tissue
spleen
6
1
2
liver
4
2
body of pancreas
1
2
2
pancreas
2
1
brain
2
+ See 24 more…
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
See all biosamples
Download