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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
376
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
376
DNA binding
10
DNA accessibility
7
DNA methylation
Target of assay
299
transcription factor
81
recombinant protein
74
histone
74
histone modification
56
RNA binding protein
45
broad histone mark
29
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
313
November, 2017
210
June, 2019
189
October, 2019
148
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
80
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
30
December, 2018
30
July, 2019
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
5
September, 2017
3
March, 2020
2
November, 2020
Available data
479
bam
414
bigWig
412
fastq
386
bed narrowPeak
385
bigBed narrowPeak
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
393
Homo sapiens
Biosample type
306
cell line
81
tissue
6
primary cell
Organ
301
liver
66
brain
12
blood
12
bodily fluid
7
pancreas
6
spleen
4
epithelium
4
vasculature
2
blood vessel
1
adipose tissue
1
connective tissue
Project
393
AMP
Genome assembly (visualization)
359
GRCh38
330
hg19
Lab
393
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
393 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
293
1
GM12878
12
tissue
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
cingulate gyrus
7
+ See 8 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
See all biosamples
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