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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
79
DNA binding
10
DNA accessibility
Target of assay
63
transcription factor
21
RNA binding protein
16
histone
16
histone modification
15
recombinant protein
8
broad histone mark
8
narrow histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
313
November, 2017
210
June, 2019
189
October, 2019
142
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
127
fastq
126
bam
111
bigWig
89
bed narrowPeak
73
bigBed narrowPeak
15
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
89
Homo sapiens
Biosample type
56
cell line
17
tissue
16
in vitro differentiated cells
Organ
51
liver
12
blood
12
bodily fluid
6
embryo
4
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
89
AMP
Genome assembly (visualization)
88
GRCh38
87
hg19
Lab
89
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
7
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
44
GM12878
12
tissue
liver
4
2
spleen
3
1
body of pancreas
2
brain
2
omental fat pad
1
+ See 2 more…
in vitro differentiated cells
pancreatic endoderm
6
definitive endodermal cell
2
embryonic stem cell
2
endocrine cell
2
posterior foregut
2
+ See 1 more…
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