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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
65
ATAC-seq
9
DNase-seq
1
FAIRE-seq
Assay category
75
DNA accessibility
66
DNA binding
Target of assay
63
transcription factor
21
RNA binding protein
15
recombinant protein
7
chromatin remodeller
3
histone
3
histone modification
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
313
November, 2017
210
June, 2019
189
October, 2019
142
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
164
fastq
141
bed narrowPeak
103
bam
103
bigWig
73
bigBed narrowPeak
61
tsv
13
bed bed3+
12
bedpe bed3+
10
bed bed3
10
hic
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
3
bed bedgraph
2
ibed
1
csv
Organism
141
Homo sapiens
Biosample type
82
tissue
57
cell line
2
in vitro differentiated cells
Organ
51
liver
35
artery
35
blood vessel
35
heart
35
vasculature
27
eye
13
epithelium
12
blood
12
bodily fluid
6
pancreas
4
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
138
AMP
3
T1D
Genome assembly (visualization)
110
GRCh38
104
hg19
Lab
139
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
141 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
coronary artery
35
retina
15
pigmented layer of retina
12
liver
4
2
spleen
3
1
+ See 7 more…
cell line
HepG2
44
GM12878
12
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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