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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
14
ATAC-seq
9
DNase-seq
1
FAIRE-seq
Assay category
95
DNA binding
24
DNA accessibility
Target of assay
63
transcription factor
32
histone
32
histone modification
21
RNA binding protein
17
broad histone mark
15
narrow histone mark
15
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
313
November, 2017
210
June, 2019
189
October, 2019
142
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
161
fastq
159
bam
152
bigWig
119
bed narrowPeak
87
bigBed narrowPeak
26
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
119
Homo sapiens
Biosample type
56
cell line
46
primary cell
17
tissue
Organ
51
liver
49
pancreas
35
epithelium
12
blood
12
bodily fluid
4
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
119
AMP
Genome assembly (visualization)
118
GRCh38
117
hg19
Lab
119
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
44
GM12878
12
primary cell
pancreatic ductal cell
13
4
pancreatic acinar cell
8
3
pancreatic endocrine cell
11
pancreatic beta cell
4
pancreatic alpha cell
3
tissue
liver
4
2
spleen
3
1
body of pancreas
2
brain
2
omental fat pad
1
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