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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
9
DNase-seq
7
WGBS
5
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
92
DNA binding
10
DNA accessibility
7
DNA methylation
6
Transcription
Target of assay
78
transcription factor
27
RNA binding protein
16
recombinant protein
13
chromatin remodeller
10
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
404
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
115
fastq
114
bam
103
bigWig
91
bed narrowPeak
91
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
5
tsv
1
csv
Organism
115
Homo sapiens
Biosample type
84
cell line
30
tissue
1
primary cell
Organ
58
liver
33
blood
33
bodily fluid
13
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
115
AMP
Genome assembly (visualization)
102
GRCh38
94
hg19
Lab
115
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
December, 2019
target.investigated_as!
other context
BIOSAMPLE
ASSAY
115 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
5
GM12878
33
tissue
spleen
10
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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