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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
15
total RNA-seq
9
DNase-seq
7
WGBS
Assay category
79
DNA binding
15
Transcription
9
DNA accessibility
7
DNA methylation
Target of assay
63
transcription factor
21
RNA binding protein
16
histone
16
histone modification
15
recombinant protein
8
broad histone mark
8
narrow histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
110
bam
110
bigWig
110
fastq
88
bed narrowPeak
72
bigBed narrowPeak
15
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
110
Homo sapiens
Biosample type
57
cell line
31
in vitro differentiated cells
22
tissue
Organ
52
liver
12
blood
12
bodily fluid
10
embryo
6
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
110
AMP
Genome assembly (visualization)
110
GRCh38
102
hg19
Lab
110
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
7
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2019
BIOSAMPLE
ASSAY
110 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
cell line
HepG2
44
1
GM12878
12
in vitro differentiated cells
pancreatic endoderm
6
4
definitive endodermal cell
2
2
embryonic stem cell
2
2
endocrine cell
2
2
posterior foregut
2
2
+ See 2 more…
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
brain
2
pancreas
2
+ See 2 more…
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