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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
10
DNase-seq
10
MeRIP-seq
9
total RNA-seq
7
WGBS
1
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
95
DNA binding
12
DNA accessibility
10
Transcription
7
DNA methylation
Target of assay
78
transcription factor
27
RNA binding protein
16
recombinant protein
15
control
13
chromatin remodeller
7
histone
7
histone modification
5
nucleotide modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
123
bam
118
fastq
111
bigWig
96
bed narrowPeak
95
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
9
tsv
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
134
Homo sapiens
Biosample type
90
cell line
37
tissue
7
primary cell
Organ
58
liver
33
blood
33
bodily fluid
17
pancreas
16
spleen
7
connective tissue
6
epithelium
2
brain
1
adipose tissue
Project
134
AMP
Genome assembly (visualization)
111
GRCh38
103
hg19
Lab
124
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2019
BIOSAMPLE
ASSAY
134 results
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Clear Filters
ChIP-seq
DNase-seq
MeRIP-seq
total RNA-seq
WGBS
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
5
1
GM12878
33
EndoC_BH1
6
tissue
spleen
13
1
2
liver
4
2
body of pancreas
2
2
islet of Langerhans
4
pancreas
2
1
+ See 3 more…
primary cell
osteoblast
1
4
1
pancreatic cell
1
See all biosamples
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