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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
22
ChIP-seq
19
WGBS
18
small RNA-seq
15
RRBS
8
Hi-C
4
single cell RNA-seq
1
ATAC-seq
Assay category
66
Transcription
34
DNA methylation
22
DNA binding
8
3D chromatin structure
1
DNA accessibility
Target of assay
23
control
2
transcription factor
1
RNA binding protein
1
recombinant protein
Date released
692
February, 2021
314
May, 2020
269
August, 2017
266
May, 2021
213
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
125
October, 2019
101
July, 2019
93
November, 2017
61
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
15
November, 2018
14
November, 2020
11
October, 2017
10
December, 2019
9
January, 2019
8
January, 2018
8
June, 2019
7
August, 2020
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
248
bam
230
bigWig
bed narrowPeak
139
bigBed narrowPeak
88
fastq
65
tsv
30
bed bedMethyl
30
bigBed bedMethyl
13
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
hdf5
1
csv
Organism
131
Homo sapiens
Biosample type
94
tissue
32
primary cell
5
cell line
Organ
31
heart
18
connective tissue
17
brain
15
kidney
13
epithelium
12
adipose tissue
12
liver
10
musculature of body
10
pancreas
10
vasculature
9
blood vessel
5
limb
5
spleen
3
blood
3
bodily fluid
2
artery
2
pericardium
1
eye
Project
131
AMP
Genome assembly (visualization)
84
hg19
81
GRCh38
Lab
131
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
131 results
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Clear Filters
total RNA-seq
ChIP-seq
WGBS
small RNA-seq
RRBS
Hi-C
single cell RNA-seq
ATAC-seq
tissue
heart left ventricle
2
6
4
1
body of pancreas
2
2
2
heart
2
2
1
1
kidney
5
1
omental fat pad
4
1
+ See 26 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
+ See 21 more…
cell line
GM12878
3
HepG2
1
1
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