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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
10
snATAC-seq
9
DNase-seq
9
single cell RNA-seq
7
WGBS
1
FAIRE-seq
Assay category
70
DNA binding
20
DNA accessibility
9
Transcription
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
667
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
87
bam
87
fastq
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
105
Homo sapiens
Biosample type
61
cell line
45
tissue
primary cell
Organ
53
liver
19
lung
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
87
AMP
19
LungMap
Genome assembly (visualization)
79
GRCh38
71
hg19
Lab
87
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
primary cell
month_released!
May, 2022
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
snATAC-seq
DNase-seq
single cell RNA-seq
WGBS
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
tissue
lung
10
9
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
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