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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
4
ATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
29
DNA binding
4
DNA accessibility
1
3D chromatin structure
1
Transcription
Target of assay
27
control
1
histone
1
histone modification
1
narrow histone mark
1
recombinant protein
1
transcription factor
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
183
fastq
182
bam
bigWig
145
bed narrowPeak
123
bigBed narrowPeak
24
bed bed3+
10
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
bedpe
1
csv
1
hic
Organism
35
Homo sapiens
Biosample type
20
tissue
9
in vitro differentiated cells
4
cell line
1
primary cell
1
stem cell
Organ
14
liver
5
embryo
5
pancreas
3
blood
3
bodily fluid
3
epithelium
3
spleen
Project
35
AMP
Genome assembly (visualization)
8
hg19
7
GRCh38
Lab
30
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
files.file_type!
bigWig
BIOSAMPLE
ASSAY
35 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
single cell RNA-seq
tissue
liver
9
islet of Langerhans
4
1
right lobe of liver
3
spleen
3
in vitro differentiated cells
pancreatic endoderm
3
Hepatic endoderm
2
Posterior foregut
1
definitive endodermal cell
1
hepatocyte
1
+ See 1 more…
cell line
GM12878
3
HepG2
1
primary cell
pancreatic cell
1
stem cell
hESC
1
See all biosamples
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