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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
9
DNase-seq
7
WGBS
4
ATAC-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
149
DNA binding
14
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
94
transcription factor
31
histone
31
histone modification
24
control
23
RNA binding protein
16
narrow histone mark
16
recombinant protein
15
broad histone mark
8
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
168
fastq
167
bam
140
bigWig
133
bed narrowPeak
111
bigBed narrowPeak
24
bed bed3+
10
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
bedpe
1
csv
1
hic
Organism
172
Homo sapiens
Biosample type
79
tissue
46
cell line
43
in vitro differentiated cells
3
stem cell
1
primary cell
Organ
116
liver
19
epithelium
15
blood
bodily fluid
13
embryo
12
pancreas
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
172
AMP
Genome assembly (visualization)
146
GRCh38
139
hg19
Lab
167
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
16
inconsistent control read length
4
inconsistent control run_type
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
172 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
Hi-C
single cell RNA-seq
tissue
liver
42
2
right lobe of liver
10
1
spleen
6
1
2
islet of Langerhans
4
1
body of pancreas
2
2
+ See 3 more…
cell line
HepG2
45
1
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
stem cell
hESC
3
primary cell
pancreatic cell
1
See all biosamples
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