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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
151
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
103
transcription factor
25
RNA binding protein
25
histone
25
histone modification
23
control
16
recombinant protein
14
broad histone mark
11
narrow histone mark
10
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
397
May, 2021
341
May, 2020
314
October, 2019
311
August, 2021
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
81
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
26
February, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
169
fastq
168
bam
144
bigWig
137
bed narrowPeak
123
bigBed narrowPeak
21
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
169
Homo sapiens
Biosample type
74
tissue
61
cell line
30
in vitro differentiated cells
3
stem cell
1
primary cell
Organ
116
liver
19
epithelium
15
blood
15
bodily fluid
embryo
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
169
AMP
Genome assembly (visualization)
147
GRCh38
139
hg19
Lab
169
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
13
inconsistent control read length
4
inconsistent control run_type
organ_slims!
embryo
BIOSAMPLE
ASSAY
169 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
liver
42
2
right lobe of liver
10
1
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
+ See 2 more…
cell line
HepG2
45
1
GM12878
15
in vitro differentiated cells
hepatocyte
15
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
stem cell
hESC
3
primary cell
pancreatic cell
1
See all biosamples
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