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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
113
DNA binding
10
DNA accessibility
Target of assay
103
transcription factor
30
histone
30
histone modification
RNA binding protein
15
broad histone mark
15
narrow histone mark
13
recombinant protein
10
chromatin remodeller
5
control
3
other context
3
other post-translational modification
Date released
574
February, 2021
316
May, 2021
268
August, 2017
260
May, 2020
247
November, 2017
217
October, 2019
183
June, 2019
164
July, 2018
92
May, 2019
91
July, 2019
73
December, 2017
72
September, 2018
62
April, 2019
59
August, 2021
58
November, 2019
50
November, 2018
49
April, 2018
45
February, 2023
39
May, 2022
36
October, 2018
32
March, 2020
31
February, 2018
28
December, 2018
20
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
123
bam
123
fastq
118
bed narrowPeak
118
bigWig
96
bigBed narrowPeak
24
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
Organism
123
Homo sapiens
Biosample type
51
tissue
36
in vitro differentiated cells
33
cell line
3
stem cell
Organ
76
liver
14
epithelium
10
blood
10
bodily fluid
9
embryo
4
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
123
AMP
Genome assembly (visualization)
131
GRCh38
123
hg19
Lab
123
AMP-T2D consortium
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
15
inconsistent control read length
3
inconsistent control run_type
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
123 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
tissue
liver
32
2
right lobe of liver
6
1
spleen
3
1
body of pancreas
2
brain
2
+ See 2 more…
in vitro differentiated cells
hepatocyte
12
pancreatic endoderm
7
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
+ See 1 more…
cell line
HepG2
23
GM12878
10
stem cell
hESC
3
See all biosamples
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