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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
9
DNase-seq
7
WGBS
5
total RNA-seq
1
FAIRE-seq
Assay category
84
DNA binding
10
DNA accessibility
7
DNA methylation
5
Transcription
Target of assay
77
transcription factor
27
RNA binding protein
15
recombinant protein
13
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
118
fastq
117
bam
106
bigWig
94
bed narrowPeak
94
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
5
tsv
1
csv
Organism
106
Homo sapiens
Biosample type
77
cell line
29
tissue
Organ
57
liver
27
blood
27
bodily fluid
12
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
106
AMP
Genome assembly (visualization)
105
GRCh38
97
hg19
Lab
106
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
cell line
HepG2
44
1
5
GM12878
27
tissue
spleen
9
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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