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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
total RNA-seq
102
ChIP-seq
50
single cell RNA-seq
14
ATAC-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
196
Transcription
102
DNA binding
24
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
32
histone
32
histone modification
21
RNA binding protein
17
broad histone mark
16
recombinant protein
15
narrow histone mark
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
323
bam
316
bigWig
211
fastq
190
tsv
119
bed narrowPeak
87
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
329
Homo sapiens
Biosample type
146
tissue
122
primary cell
61
cell line
Organ
236
pancreas
94
epithelium
53
liver
15
blood
15
bodily fluid
9
spleen
3
connective tissue
2
brain
1
adipose tissue
Project
329
AMP
Genome assembly (visualization)
315
GRCh38
307
hg19
Lab
329
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
329 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
120
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
primary cell
pancreatic ductal cell
4
13
3
4
pancreatic beta cell
10
9
4
pancreatic alpha cell
10
7
3
pancreatic acinar cell
2
8
5
3
pancreatic endocrine cell
11
+ See 11 more…
cell line
HepG2
45
1
GM12878
15
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