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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
9
DNase-seq
7
WGBS
4
ATAC-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
70
DNA binding
14
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
670
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
246
May, 2021
218
June, 2019
168
July, 2018
120
May, 2019
108
July, 2019
106
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
61
November, 2019
57
March, 2020
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
89
fastq
88
bam
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
10
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
bedpe
1
csv
1
hic
Organism
93
Homo sapiens
Biosample type
61
cell line
31
tissue
1
primary cell
Organ
53
liver
15
blood
15
bodily fluid
12
pancreas
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
93
AMP
Genome assembly (visualization)
81
GRCh38
74
hg19
Lab
88
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
93 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
islet of Langerhans
4
1
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
primary cell
pancreatic cell
1
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