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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
6
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
WGBS
1
single cell RNA-seq
Assay category
60
DNA binding
5
Transcription
2
DNA accessibility
1
DNA methylation
Target of assay
57
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
nucleotide modification
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
0
March, 2019
Available data
67
bam
62
bigWig
62
fastq
58
bed narrowPeak
57
bigBed narrowPeak
4
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
csv
Organism
74
Homo sapiens
Biosample type
67
cell line
tissue
7
primary cell
Organ
46
liver
15
blood
15
bodily fluid
6
connective tissue
6
epithelium
6
pancreas
Project
74
AMP
Genome assembly (visualization)
63
GRCh38
60
hg19
Lab
68
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
74 results
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Clear Filters
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
6
primary cell
osteoblast
4
1
1
pancreatic cell
1
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