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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
ChIP-seq
9
DNase-seq
7
WGBS
5
total RNA-seq
4
ATAC-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
95
DNA binding
14
DNA accessibility
7
DNA methylation
6
Transcription
1
3D chromatin structure
Target of assay
78
transcription factor
27
RNA binding protein
16
recombinant protein
13
chromatin remodeller
10
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
119
fastq
118
bam
106
bigWig
94
bed narrowPeak
94
bigBed narrowPeak
10
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
5
tsv
1
bedpe
1
csv
1
hic
Organism
123
Homo sapiens
Biosample type
84
cell line
38
tissue
1
primary cell
Organ
58
liver
33
blood
33
bodily fluid
16
spleen
12
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
123
AMP
Genome assembly (visualization)
107
GRCh38
100
hg19
Lab
118
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
123 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG2
45
1
5
GM12878
33
tissue
spleen
13
1
2
liver
4
2
islet of Langerhans
4
1
body of pancreas
2
2
pancreas
2
1
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primary cell
pancreatic cell
1
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