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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
9
DNase-seq
7
WGBS
4
ATAC-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
190
DNA binding
14
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
92
histone
92
histone modification
69
transcription factor
58
broad histone mark
34
narrow histone mark
29
control
26
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
208
bam
177
bigWig
170
bed narrowPeak
170
bigBed narrowPeak
89
fastq
10
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
bedpe
1
csv
1
hic
Organism
213
Homo sapiens
Biosample type
146
tissue
61
cell line
6
primary cell
Organ
53
liver
50
blood vessel
50
vasculature
30
brain
21
heart
15
blood
15
bodily fluid
14
pancreas
9
spleen
7
limb
7
musculature of body
5
artery
5
epithelium
5
kidney
1
adipose tissue
1
connective tissue
Project
213
AMP
Genome assembly (visualization)
177
GRCh38
171
hg19
Lab
208
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
213 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
Hi-C
single cell RNA-seq
tissue
ascending aorta
16
thoracic aorta
16
temporal lobe
15
angular gyrus
13
aorta
13
+ See 13 more…
cell line
HepG2
45
1
GM12878
15
primary cell
kidney epithelial cell
5
pancreatic cell
1
See all biosamples
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