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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
44
single cell RNA-seq
9
DNase-seq
7
WGBS
6
total RNA-seq
4
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
70
DNA binding
50
Transcription
14
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
406
November, 2017
404
August, 2017
399
May, 2021
341
May, 2020
318
August, 2021
314
October, 2019
218
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
137
bam
133
fastq
129
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
49
tsv
10
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
bedpe
1
csv
1
hic
Organism
142
Homo sapiens
Biosample type
61
cell line
44
primary cell
37
tissue
Organ
53
liver
51
pancreas
33
epithelium
15
blood
15
bodily fluid
9
spleen
3
connective tissue
2
brain
1
adipose tissue
Project
142
AMP
Genome assembly (visualization)
130
GRCh38
123
hg19
Lab
137
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
142 results
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Clear Filters
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
total RNA-seq
ATAC-seq
FAIRE-seq
Hi-C
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic delta cell
7
pancreatic acinar cell
6
pancreatic ductal cell
6
pancreatic polypeptide-secreting cell
6
mesenchymal cell
5
+ See 5 more…
tissue
islet of Langerhans
6
4
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
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