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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
ChIP-seq
48
WGBS
35
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
9
DNase-seq
1
FAIRE-seq
Assay category
109
DNA accessibility
61
Transcription
48
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
134
zippedFastqFolder
48
bed narrowPeak
42
fastq
41
bam
37
bigWig
10
bed bed3+
10
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
218
Homo sapiens
Biosample type
135
primary cell
82
tissue
1
cell line
Organ
111
pancreas
80
epithelium
44
liver
3
spleen
2
brain
2
musculature of body
1
adipose tissue
1
connective tissue
Project
134
HPAP
84
AMP
Genome assembly (visualization)
49
hg19
16
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
20
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
218 results
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ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
20
20
2
islet of Langerhans
18
6
body of pancreas
2
2
pancreas
2
1
spleen
2
1
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cell line
HepG2
1
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