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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
42
WGBS
39
ATAC-seq
34
single cell RNA-seq
21
snATAC-seq
Assay category
60
DNA accessibility
60
DNA binding
42
DNA methylation
34
Transcription
Target of assay
57
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
3
control
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
134
zippedFastqFolder
62
fastq
61
bam
57
bigWig
56
bed narrowPeak
56
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
196
Homo sapiens
Biosample type
135
primary cell
tissue
61
cell line
Organ
80
epithelium
80
pancreas
46
liver
15
blood
15
bodily fluid
Project
134
HPAP
62
AMP
Genome assembly (visualization)
57
GRCh38
54
hg19
Lab
134
Klaus Kaestner, Upenn
62
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
196 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
pancreatic cell
1
cell line
HepG2
45
1
GM12878
15
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