Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
38
ATAC-seq
26
total RNA-seq
9
DNase-seq
6
WGBS
1
FAIRE-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
92
DNA binding
49
DNA accessibility
27
Transcription
6
DNA methylation
Target of assay
70
histone
70
histone modification
42
broad histone mark
28
narrow histone mark
15
control
7
transcription factor
3
other context
3
other post-translational modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
119
bam
113
bed narrowPeak
100
bigWig
74
bigBed narrowPeak
66
tagAlign
50
fastq
15
bed broadPeak
10
bed bed3+
9
bigBed broadPeak
7
txt
6
bed bedMethyl
6
bigBed bedMethyl
Organism
174
Homo sapiens
Biosample type
376
cell line
174
tissue
144
primary cell
Organ
84
brain
47
liver
31
pancreas
9
spleen
2
musculature of body
1
adipose tissue
1
connective tissue
Project
174
AMP
Genome assembly (visualization)
79
GRCh38
62
hg19
Lab
110
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
BIOSAMPLE
ASSAY
174 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
snATAC-seq
tissue
liver
4
20
20
2
islet of Langerhans
18
6
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
+ See 10 more…
See all biosamples
Download