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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
38
ATAC-seq
26
total RNA-seq
9
DNase-seq
6
WGBS
1
FAIRE-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
84
DNA binding
49
DNA accessibility
27
Transcription
6
DNA methylation
Target of assay
32
control
30
histone
30
histone modification
22
transcription factor
19
broad histone mark
11
RNA binding protein
11
narrow histone mark
3
other context
3
other post-translational modification
Date released
545
February, 2021
284
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
124
bam
108
fastq
100
bed narrowPeak
88
bigWig
62
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
txt
6
bed bedMethyl
6
bigBed bedMethyl
Organism
166
Homo sapiens
Biosample type
166
tissue
137
primary cell
61
cell line
Organ
82
pancreas
47
liver
24
adipose tissue
24
connective tissue
9
spleen
2
brain
2
musculature of body
Project
166
AMP
Genome assembly (visualization)
101
hg19
67
GRCh38
Lab
102
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
1
inconsistent control read length
BIOSAMPLE
ASSAY
166 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
snATAC-seq
tissue
liver
4
20
20
2
body of pancreas
33
2
2
islet of Langerhans
18
6
endocrine pancreas
16
omental fat pad
11
1
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