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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
70
ChIP-seq
48
WGBS
35
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
8
DNase-seq
1
FAIRE-seq
Assay category
108
DNA accessibility
70
DNA binding
61
Transcription
48
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
406
November, 2017
397
May, 2021
341
May, 2020
314
August, 2021
310
October, 2019
286
August, 2017
260
February, 2021
200
June, 2019
200
May, 2022
191
February, 2023
166
July, 2018
120
May, 2019
94
December, 2017
90
July, 2019
87
November, 2018
80
April, 2019
73
September, 2018
62
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
47
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
111
fastq
110
bam
110
bed narrowPeak
99
bigWig
72
bigBed narrowPeak
9
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
1
csv
Organism
287
Homo sapiens
Biosample type
135
primary cell
91
tissue
61
cell line
Organ
111
pancreas
93
liver
80
epithelium
15
blood
15
bodily fluid
9
spleen
2
brain
2
musculature of body
1
adipose tissue
connective tissue
Project
153
AMP
134
HPAP
Genome assembly (visualization)
109
hg19
78
GRCh38
Lab
134
Klaus Kaestner, Upenn
89
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
287 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
20
4
20
2
islet of Langerhans
18
6
spleen
6
2
1
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
cell line
HepG2
45
1
GM12878
15
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