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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
26
ATAC-seq
20
total RNA-seq
9
DNase-seq
7
WGBS
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
76
DNA binding
36
DNA accessibility
21
Transcription
7
DNA methylation
2
3D chromatin structure
Target of assay
65
transcription factor
22
RNA binding protein
16
recombinant protein
10
histone
10
histone modification
8
control
chromatin remodeller
6
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
715
February, 2021
408
August, 2017
399
May, 2021
391
November, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
91
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
139
bam
104
bigWig
103
bed narrowPeak
81
fastq
66
bigBed narrowPeak
20
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
142
Homo sapiens
Biosample type
70
cell line
66
tissue
5
in vitro differentiated cells
1
primary cell
Organ
62
pancreas
48
liver
16
epithelium
13
blood
13
bodily fluid
9
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
142
AMP
Genome assembly (visualization)
129
GRCh38
123
hg19
Lab
142
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
142 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
cell line
HepG2
40
1
EndoC_BH1
13
1
1
1
GM12878
13
tissue
islet of Langerhans
19
19
1
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
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in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
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