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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
9
DNase-seq
7
WGBS
2
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
125
DNA binding
10
DNA accessibility
7
DNA methylation
3
Transcription
Target of assay
79
transcription factor
35
control
32
RNA binding protein
30
histone
30
histone modification
broad histone mark
16
recombinant protein
11
narrow histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
259
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
144
bam
137
fastq
108
bigWig
99
bed narrowPeak
99
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
tsv
1
csv
Organism
145
Homo sapiens
Biosample type
81
tissue
61
cell line
3
primary cell
Organ
53
liver
41
pancreas
24
adipose tissue
24
connective tissue
15
blood
15
bodily fluid
9
spleen
2
brain
2
epithelium
Project
145
AMP
Genome assembly (visualization)
107
GRCh38
99
hg19
Lab
145
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
145 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
single cell RNA-seq
tissue
body of pancreas
22
2
2
omental fat pad
11
1
subcutaneous adipose tissue
12
spleen
6
1
2
endocrine pancreas
8
+ See 4 more…
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic acinar cell
2
pancreatic cell
1
See all biosamples
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