Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
DNase-seq
41
ChIP-seq
41
single cell RNA-seq
16
total RNA-seq
6
WGBS
3
ATAC-seq
1
FAIRE-seq
Assay category
200
DNA accessibility
57
Transcription
41
DNA binding
6
DNA methylation
Target of assay
19
histone
19
histone modification
11
control
11
narrow histone mark
11
transcription factor
8
broad histone mark
4
RNA binding protein
3
other context
3
other post-translational modification
Date released
619
February, 2021
411
August, 2017
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
200
May, 2022
199
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
53
March, 2020
49
April, 2018
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
10
November, 2020
7
August, 2020
7
December, 2018
7
January, 2018
7
January, 2019
5
March, 2019
4
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
244
bam
236
bigWig
227
bed narrowPeak
227
bigBed narrowPeak
196
bed bed3+
196
bed broadPeak
196
bigBed broadPeak
68
fastq
19
zippedFastqFolder
6
bed bedMethyl
6
bigBed bedMethyl
1
csv
Organism
304
Homo sapiens
Biosample type
189
tissue
115
primary cell
cell line
Organ
81
kidney
43
musculature of body
39
epithelium
35
heart
32
brain
32
limb
30
pancreas
19
connective tissue
18
ureter
9
liver
9
spleen
7
eye
7
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
245
AMP
59
HPAP
Genome assembly (visualization)
235
GRCh38
204
hg19
Lab
245
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
26
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
304 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
WGBS
ATAC-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
+ See 21 more…
See all biosamples
Download