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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
23
single cell RNA-seq
16
total RNA-seq
9
DNase-seq
7
WGBS
3
ATAC-seq
1
FAIRE-seq
Assay category
70
DNA binding
39
Transcription
13
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
129
fastq
87
bam
83
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
19
zippedFastqFolder
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
129
Homo sapiens
Biosample type
61
cell line
42
primary cell
26
tissue
Organ
53
liver
26
pancreas
19
epithelium
15
blood
15
bodily fluid
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
88
AMP
41
HPAP
Genome assembly (visualization)
82
GRCh38
71
hg19
Lab
88
AMP-T2D consortium
41
Klaus Kaestner, Upenn
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
August, 2022
BIOSAMPLE
ASSAY
129 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
primary cell
Langerhans cell
22
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
pancreatic cell
1
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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