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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
8
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
150
DNA binding
9
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
70
transcription factor
60
histone
60
histone modification
37
broad histone mark
25
RNA binding protein
23
narrow histone mark
20
control
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
354
August, 2017
318
August, 2021
313
October, 2019
296
May, 2020
284
February, 2021
246
May, 2021
217
June, 2019
168
July, 2018
120
May, 2019
105
February, 2023
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
66
May, 2022
60
November, 2019
56
March, 2020
53
October, 2018
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
January, 2018
5
March, 2019
3
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
165
bam
144
bigWig
137
bed narrowPeak
136
bigBed narrowPeak
87
fastq
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
167
Homo sapiens
Biosample type
105
tissue
61
cell line
1
primary cell
Organ
57
heart
53
liver
23
kidney
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
adipose tissue
1
connective tissue
Project
167
AMP
Genome assembly (visualization)
142
GRCh38
135
hg19
Lab
167
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
167 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
spleen
6
1
2
+ See 5 more…
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic cell
1
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