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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
501
ChIP-seq
8
DNase-seq
7
WGBS
5
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
501
DNA binding
9
DNA accessibility
7
DNA methylation
6
Transcription
Target of assay
322
transcription factor
95
histone
95
histone modification
82
recombinant protein
81
control
64
RNA binding protein
54
broad histone mark
41
narrow histone mark
28
chromatin remodeller
5
other context
5
other post-translational modification
Date released
406
November, 2017
399
May, 2021
354
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
508
bam
441
fastq
439
bigWig
406
bed narrowPeak
405
bigBed narrowPeak
78
bed broadPeak
78
tagAlign
72
bigBed broadPeak
8
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
5
tsv
3
tar
1
csv
Organism
523
Homo sapiens
Biosample type
399
cell line
114
tissue
10
primary cell
Organ
373
liver
93
brain
33
blood
33
bodily fluid
16
spleen
7
pancreas
6
epithelium
6
vasculature
3
blood vessel
adipose tissue
1
connective tissue
Project
523
AMP
Genome assembly (visualization)
384
GRCh38
377
hg19
Lab
523
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
523 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
360
1
5
GM12878
33
tissue
layer of hippocampus
22
spleen
13
1
2
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 7 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic cell
1
See all biosamples
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