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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
476
ChIP-seq
8
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
476
DNA binding
9
DNA accessibility
1
Transcription
Target of assay
308
transcription factor
88
histone
88
histone modification
82
recombinant protein
77
control
58
RNA binding protein
50
broad histone mark
38
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
406
November, 2017
399
May, 2021
350
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
313
October, 2019
217
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
80
April, 2019
80
November, 2018
73
July, 2019
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
478
bam
413
bigWig
411
fastq
385
bed narrowPeak
384
bigBed narrowPeak
78
bed broadPeak
78
tagAlign
72
bigBed broadPeak
8
bed bed3+
7
bed bedMethyl
bigBed bedMethyl
3
tar
1
csv
Organism
486
Homo sapiens
Biosample type
375
cell line
101
tissue
10
primary cell
Organ
367
liver
93
brain
15
blood
15
bodily fluid
7
spleen
6
epithelium
6
vasculature
3
blood vessel
3
pancreas
adipose tissue
1
connective tissue
Project
486
AMP
Genome assembly (visualization)
351
GRCh38
351
hg19
Lab
486
AMP-T2D consortium
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
organ_slims!
adipose tissue
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
486 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
360
GM12878
15
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 7 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
pancreatic cell
1
See all biosamples
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