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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
438
ChIP-seq
8
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
438
DNA binding
9
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
308
transcription factor
88
histone
88
histone modification
82
recombinant protein
77
control
58
RNA binding protein
50
broad histone mark
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
368
November, 2017
335
May, 2021
329
February, 2021
314
May, 2020
307
August, 2021
278
August, 2017
206
June, 2019
204
February, 2023
200
May, 2022
172
October, 2019
168
July, 2018
96
July, 2019
87
November, 2018
86
May, 2019
78
December, 2017
60
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
56
November, 2019
49
April, 2018
47
September, 2023
42
October, 2018
35
December, 2018
31
February, 2018
27
January, 2019
25
May, 2024
23
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
449
bam
401
fastq
383
bigWig
356
bed narrowPeak
356
bigBed narrowPeak
65
bed broadPeak
63
bigBed broadPeak
52
tagAlign
8
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
455
Homo sapiens
Biosample type
369
cell line
79
tissue
7
primary cell
Organ
361
liver
62
brain
15
blood
15
bodily fluid
9
spleen
7
pancreas
4
epithelium
4
vasculature
2
blood vessel
adipose tissue
1
connective tissue
Project
455
AMP
Genome assembly (visualization)
337
hg19
330
GRCh38
Lab
455
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
organ_slims!
adipose tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
455 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
353
1
GM12878
15
tissue
layer of hippocampus
15
caudate nucleus
10
substantia nigra
10
cingulate gyrus
9
middle frontal area 46
9
+ See 7 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
pancreatic cell
1
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