Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
10
MeRIP-seq
DNase-seq
7
WGBS
4
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
70
DNA binding
7
DNA methylation
5
Transcription
2
DNA accessibility
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
11
control
7
chromatin remodeller
5
nucleotide modification
3
other context
3
other post-translational modification
Date released
406
November, 2017
399
May, 2021
349
August, 2017
341
May, 2020
329
February, 2021
318
August, 2021
303
October, 2019
204
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
96
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
73
September, 2018
63
March, 2020
60
November, 2019
59
September, 2020
53
October, 2018
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
23
February, 2020
22
October, 2017
19
April, 2020
16
January, 2021
15
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
83
bam
79
fastq
75
bigWig
65
bed narrowPeak
64
bigBed narrowPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tsv
1
csv
Organism
94
Homo sapiens
Biosample type
67
cell line
21
tissue
6
primary cell
Organ
50
liver
15
blood
15
bodily fluid
15
pancreas
8
spleen
6
epithelium
5
connective tissue
Project
94
AMP
Genome assembly (visualization)
75
GRCh38
67
hg19
Lab
84
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
adipose tissue
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
94 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
MeRIP-seq
WGBS
total RNA-seq
ATAC-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
EndoC_BH1
6
tissue
spleen
6
2
islet of Langerhans
4
liver
4
pancreas
2
1
body of pancreas
2
primary cell
osteoblast
4
1
pancreatic cell
1
Download