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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
7
DNase-seq
7
WGBS
3
single cell RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
70
DNA binding
8
DNA accessibility
7
DNA methylation
3
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
709
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
188
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
85
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
90
fastq
88
bam
81
bigWig
71
bed narrowPeak
71
bigBed narrowPeak
7
bed bed3+
7
bed bedMethyl
7
bed broadPeak
7
bigBed bedMethyl
7
bigBed broadPeak
3
tsv
1
bedpe bed3+
csv
Organism
89
Homo sapiens
Biosample type
61
cell line
24
tissue
3
primary cell
1
in vitro differentiated cells
Organ
53
liver
15
blood
15
bodily fluid
10
pancreas
9
spleen
3
epithelium
2
adipose tissue
brain
2
connective tissue
Project
89
AMP
Genome assembly (visualization)
80
GRCh38
72
hg19
Lab
89
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
brain
files.file_type!
csv
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
pCHi-C
cell line
HepG2
45
1
GM12878
15
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
omental fat pad
1
+ See 1 more…
primary cell
pancreatic alpha cell
2
pancreatic acinar cell
1
in vitro differentiated cells
white fat cell
1
See all biosamples
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