Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
total RNA-seq
70
ChIP-seq
49
single cell RNA-seq
7
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
169
Transcription
70
DNA binding
8
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
315
November, 2017
228
October, 2019
204
February, 2023
200
May, 2022
June, 2019
168
July, 2018
94
December, 2017
92
May, 2019
90
July, 2019
86
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
February, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
249
bam
242
bigWig
164
tsv
136
fastq
71
bed narrowPeak
71
bigBed narrowPeak
7
bed bed3+
7
bed bedMethyl
7
bed broadPeak
7
bigBed bedMethyl
7
bigBed broadPeak
1
csv
Organism
254
Homo sapiens
Biosample type
144
tissue
61
cell line
49
primary cell
Organ
164
pancreas
53
liver
33
epithelium
15
blood
15
bodily fluid
9
spleen
3
connective tissue
brain
1
adipose tissue
Project
254
AMP
Genome assembly (visualization)
241
GRCh38
233
hg19
Lab
254
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
brain
month_released!
June, 2019
BIOSAMPLE
ASSAY
254 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
120
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 2 more…
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic cell
4
pancreatic delta cell
4
+ See 10 more…
See all biosamples
Download