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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
7
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
59
DNA binding
8
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
59
transcription factor
20
RNA binding protein
16
recombinant protein
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
712
February, 2021
390
May, 2021
345
August, 2017
318
May, 2020
307
August, 2021
238
November, 2017
204
February, 2023
200
May, 2022
196
October, 2019
180
June, 2019
168
July, 2018
90
July, 2019
75
November, 2018
73
September, 2018
72
May, 2019
66
April, 2019
62
December, 2017
62
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
46
October, 2018
40
May, 2024
31
December, 2018
29
February, 2018
26
January, 2019
19
April, 2020
16
January, 2021
15
May, 2023
13
February, 2020
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
7
October, 2017
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
75
fastq
74
bam
73
bigWig
66
bed narrowPeak
66
bigBed narrowPeak
7
bed bed3+
7
bed bedMethyl
7
bed broadPeak
7
bigBed bedMethyl
7
bigBed broadPeak
1
csv
Organism
75
Homo sapiens
Biosample type
53
cell line
21
tissue
1
primary cell
Organ
48
liver
12
blood
12
bodily fluid
7
pancreas
6
spleen
brain
1
adipose tissue
1
connective tissue
Project
75
AMP
Genome assembly (visualization)
72
GRCh38
64
hg19
Lab
75
AMP-T2D consortium
Audit category:
1
missing controlled_by
Audit category:
inconsistent control read length
4
inconsistent control run_type
organ_slims!
brain
target.investigated_as!
control
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
40
1
GM12878
12
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
omental fat pad
1
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primary cell
pancreatic cell
1
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