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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
48
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
recombinant protein
7
chromatin remodeller
control
3
other context
3
other post-translational modification
Date released
712
February, 2021
390
May, 2021
361
August, 2017
318
May, 2020
307
August, 2021
269
November, 2017
268
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
73
December, 2017
73
September, 2018
66
April, 2019
66
November, 2018
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
66
fastq
65
bam
65
bigWig
58
bed narrowPeak
58
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
66
Homo sapiens
Biosample type
42
cell line
23
tissue
1
primary cell
Organ
37
liver
12
blood
12
bodily fluid
7
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
66
AMP
Genome assembly (visualization)
64
GRCh38
58
hg19
Lab
66
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
control
recombinant protein
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
29
1
GM12878
12
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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