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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
294
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
294
DNA binding
10
DNA accessibility
Target of assay
299
transcription factor
recombinant protein
73
histone
73
histone modification
56
RNA binding protein
45
broad histone mark
28
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
246
November, 2017
210
June, 2019
97
May, 2019
70
October, 2019
64
April, 2019
58
November, 2018
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
397
bam
333
bigWig
330
fastq
305
bed narrowPeak
304
bigBed narrowPeak
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
304
Homo sapiens
Biosample type
224
cell line
74
tissue
6
primary cell
Organ
219
liver
65
brain
12
blood
12
bodily fluid
4
epithelium
4
spleen
4
vasculature
3
pancreas
2
blood vessel
1
adipose tissue
1
connective tissue
Project
304
AMP
Genome assembly (visualization)
271
GRCh38
251
hg19
Lab
304
AMP-T2D consortium
Audit category:
12
missing controlled_by
Audit category:
23
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
304 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
212
GM12878
12
tissue
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
substantia nigra
11
cingulate gyrus
6
+ See 8 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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