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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
9
DNase-seq
7
WGBS
2
total RNA-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
208
DNA binding
10
DNA accessibility
7
DNA methylation
3
Transcription
Target of assay
90
histone
90
histone modification
85
transcription factor
56
broad histone mark
49
control
36
RNA binding protein
34
narrow histone mark
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
399
May, 2021
341
May, 2020
340
November, 2017
319
August, 2021
307
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
September, 2018
72
November, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
226
bam
177
bigWig
168
bed narrowPeak
167
bigBed narrowPeak
132
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
tsv
1
csv
Organism
228
Homo sapiens
Biosample type
180
tissue
45
cell line
3
primary cell
Organ
60
pancreas
57
heart
37
liver
24
adipose tissue
24
connective tissue
23
kidney
15
blood
15
bodily fluid
9
spleen
2
brain
2
epithelium
Project
228
AMP
Genome assembly (visualization)
175
GRCh38
170
hg19
Lab
228
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
228 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
total RNA-seq
FAIRE-seq
single cell RNA-seq
tissue
body of pancreas
33
2
2
heart left ventricle
35
kidney
23
endocrine pancreas
16
heart right ventricle
13
+ See 8 more…
cell line
HepG2
29
1
GM12878
15
primary cell
pancreatic acinar cell
2
pancreatic cell
1
See all biosamples
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