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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
46
total RNA-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
13
ChIP-seq
2
Hi-C
Assay category
80
Transcription
41
DNA methylation
22
DNA accessibility
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
693
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
95
zippedFastqFolder
39
bam
31
bigWig
20
tsv
11
bed narrowPeak
7
txt
6
fastq
2
bedpe bed3+
2
hic
1
bed bed3+
Organism
158
Homo sapiens
Biosample type
95
primary cell
48
tissue
15
cell line
Organ
82
pancreas
56
epithelium
20
liver
2
musculature of body
Project
95
HPAP
63
AMP
Genome assembly (visualization)
34
hg19
31
GRCh38
Lab
95
Klaus Kaestner, Upenn
37
AMP-T2D consortium
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
15
inconsistent ontology term
1
audit script error
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
158 results
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Clear Filters
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
ChIP-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
islet of Langerhans
25
1
liver
20
skeletal muscle tissue
1
1
cell line
EndoC_BH1
1
13
1
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