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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
26
ATAC-seq
20
total RNA-seq
9
DNase-seq
7
WGBS
2
Hi-C
1
FAIRE-seq
1
single cell RNA-seq
Assay category
36
DNA accessibility
21
Transcription
7
DNA methylation
2
3D chromatin structure
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
63
bam
37
bigWig
36
bed narrowPeak
20
tsv
18
fastq
10
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
66
Homo sapiens
Biosample type
56
tissue
5
in vitro differentiated cells
4
cell line
1
primary cell
Organ
49
pancreas
4
liver
3
epithelium
3
spleen
2
adipose tissue
2
brain
2
connective tissue
Project
66
AMP
Genome assembly (visualization)
62
GRCh38
58
hg19
Lab
66
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
66 results
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Clear Filters
ATAC-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
FAIRE-seq
single cell RNA-seq
tissue
islet of Langerhans
19
19
1
body of pancreas
2
2
pancreas
2
1
spleen
1
2
brain
2
+ See 4 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cell line
EndoC_BH1
1
1
1
HepG2
1
primary cell
pancreatic cell
1
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