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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
565
total RNA-seq
84
RNA microarray
48
ATAC-seq
27
snATAC-seq
21
ChIP-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
Hi-C
2
pCHi-C
Assay category
583
Transcription
75
DNA accessibility
21
DNA binding
6
DNA methylation
Target of assay
10
histone
10
histone modification
6
broad histone mark
6
transcription factor
5
control
4
narrow histone mark
1
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
316
August, 2021
309
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
100
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
November, 2019
59
September, 2020
54
March, 2020
49
April, 2018
47
September, 2023
39
February, 2018
34
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
4
August, 2018
4
March, 2019
4
March, 2023
3
June, 2018
1
August, 2022
1
October, 2022
Available data
631
bam
582
bigWig
579
tsv
89
txt
60
bed narrowPeak
45
fastq
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
774
Homo sapiens
Biosample type
584
tissue
111
cell line
48
primary cell
31
in vitro differentiated cells
Organ
456
connective tissue
387
adipose tissue
150
bone element
85
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
47
epithelium
8
kidney
8
skeleton
6
limb
3
liver
Project
729
AMP
45
HPAP
Genome assembly (visualization)
631
hg19
625
GRCh38
Lab
729
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
149
inconsistent ontology term
32
audit script error
1
inconsistent replicate
assay_title!
Hi-C
BIOSAMPLE
ASSAY
774 results
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total RNA-seq
RNA microarray
ATAC-seq
snATAC-seq
ChIP-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
islet of Langerhans
19
19
kidney
5
+ See 15 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
27
1
13
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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