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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
26
ATAC-seq
25
total RNA-seq
3
single cell RNA-seq
2
Hi-C
Assay category
32
DNA binding
28
Transcription
26
DNA accessibility
2
3D chromatin structure
Target of assay
17
histone
17
histone modification
15
transcription factor
10
broad histone mark
7
RNA binding protein
7
narrow histone mark
6
chromatin remodeller
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
86
bam
60
bigWig
58
bed narrowPeak
29
fastq
28
tsv
21
bigBed narrowPeak
2
bedpe bed3+
2
hic
Organism
88
Homo sapiens
Biosample type
46
tissue
34
cell line
5
in vitro differentiated cells
3
primary cell
Organ
54
pancreas
15
blood
15
bodily fluid
15
epithelium
6
spleen
5
liver
1
adipose tissue
1
connective tissue
Project
88
AMP
Genome assembly (visualization)
88
hg19
86
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
BIOSAMPLE
ASSAY
88 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
Hi-C
tissue
islet of Langerhans
19
19
1
spleen
6
adipose tissue(adipose white tissue)
1
cell line
GM12878
15
EndoC_BH1
11
1
1
1
HepG2
5
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
pancreatic ductal cell
1
unclassified exocrine cell
1
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