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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
27
total RNA-seq
20
ATAC-seq
1
Hi-C
1
single cell RNA-seq
Assay category
45
DNA binding
28
Transcription
20
DNA accessibility
1
3D chromatin structure
Target of assay
42
histone
42
histone modification
23
broad histone mark
19
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
92
bam
84
bigWig
73
fastq
63
bed narrowPeak
27
tsv
14
bigBed narrowPeak
1
bedpe bed3+
1
csv
1
hic
Organism
94
Homo sapiens
Biosample type
73
primary cell
tissue
16
cell line
5
in vitro differentiated cells
Organ
88
pancreas
77
epithelium
Project
94
AMP
Genome assembly (visualization)
91
hg19
90
GRCh38
Lab
94
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
Audit category:
32
missing controlled_by
biosample_type!
tissue
BIOSAMPLE
ASSAY
94 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 1 more…
cell line
EndoC_BH1
13
1
1
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
See all biosamples
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