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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
total RNA-seq
21
ChIP-seq
10
ATAC-seq
1
Hi-C
1
pCHi-C
Assay category
79
Transcription
21
DNA binding
10
DNA accessibility
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
6
transcription factor
5
control
4
narrow histone mark
1
RNA binding protein
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
110
bam
95
bigWig
79
tsv
26
bed narrowPeak
8
tagAlign
1
bed bed3
1
bed bed3+
1
bedpe bed3+
1
hic
Organism
112
Homo sapiens
Biosample type
585
tissue
112
cell line
48
primary cell
31
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
42
epithelium
42
pancreas
2
liver
Project
112
AMP
Genome assembly (visualization)
107
hg19
105
GRCh38
Lab
112
AMP-T2D consortium
Audit category:
42
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
112 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
27
13
1
1
HepG2
1
1
iPSC derived cell line
2
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