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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
5
total RNA-seq
4
pCHi-C
3
ATAC-seq
1
Hi-C
Assay category
14
DNA binding
5
Transcription
3
DNA accessibility
1
3D chromatin structure
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
20
bam
19
bigWig
13
bed narrowPeak
10
tsv
1
bedpe bed3+
1
hic
Organism
27
Homo sapiens
Biosample type
80
tissue
27
cell line
13
in vitro differentiated cells
4
stem cell
1
primary cell
Organ
21
epithelium
21
pancreas
2
kidney
1
mammary gland
Project
24
AMP
3
T1D
Genome assembly (visualization)
21
hg19
18
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
Hi-C
cell line
EndoC_BH1
14
3
3
1
early embryonic cell
2
MCF-7
1
RCC 7860 VHL
1
RCC 7860 vector
1
fibroblast cell line
1
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