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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
1
ATAC-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
total RNA-seq
Assay category
13
DNA binding
3
Transcription
1
3D chromatin structure
1
DNA accessibility
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
15
bam
12
bed narrowPeak
12
bigWig
1
bedpe bed3+
1
hic
1
tsv
Organism
16
Homo sapiens
Biosample type
40
tissue
18
cell line
5
in vitro differentiated cells
2
stem cell
1
primary cell
Organ
16
epithelium
16
pancreas
Project
16
AMP
2
community
Genome assembly (visualization)
14
hg19
13
GRCh38
Lab
16
AMP-T2D consortium
2
Anna Gloyn, Oxford
Audit category:
16
inconsistent ontology term
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
ATAC-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
total RNA-seq
cell line
EndoC_BH1
13
1
1
1
EndoC-BH1
1
1
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