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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
6
WGBS
4
ATAC-seq
3
snDrop-seq
2
Hi-C
1
pCHi-C
Assay category
31
DNA accessibility
18
Transcription
6
DNA methylation
2
3D chromatin structure
Date released
270
August, 2021
205
February, 2023
176
May, 2022
143
February, 2021
129
August, 2017
122
May, 2021
64
October, 2019
59
September, 2020
58
May, 2020
48
March, 2020
47
September, 2023
26
July, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
14
November, 2017
10
November, 2020
8
January, 2018
8
October, 2017
7
August, 2020
5
December, 2019
5
March, 2023
4
July, 2018
4
March, 2019
4
October, 2022
2
November, 2019
1
April, 2019
1
August, 2018
1
August, 2022
1
December, 2018
1
November, 2018
1
September, 2018
Available data
bam
582
bigWig
579
tsv
89
txt
60
bed narrowPeak
45
fastq
8
tagAlign
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
2
bedpe bed3+
2
hic
Organism
145
Homo sapiens
Biosample type
94
tissue
45
primary cell
4
in vitro differentiated cells
2
cell line
Organ
84
bone element
8
kidney
8
pancreas
7
epithelium
4
connective tissue
2
liver
Project
100
AMP
45
HPAP
Genome assembly (visualization)
7
hg19
Lab
100
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
85
inconsistent ontology term
32
audit script error
files.file_type!
bam
BIOSAMPLE
ASSAY
145 results
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RNA microarray
snATAC-seq
single cell RNA-seq
WGBS
ATAC-seq
snDrop-seq
Hi-C
pCHi-C
tissue
bone element
84
kidney
5
islet of Langerhans
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
+ See 2 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
in vitro differentiated cells
adipocyte
4
cell line
EndoC_BH1
1
HepG2
1
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